PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02486g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 197aa    MW: 22547.9 Da    PI: 10.0899
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02486g00010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-18363257
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              r+R+++t++ql +L++l++k  r+p+  + ++++++l    +++ ++V++WFqN++a++++
  Peinf101Scf02486g00010.1  3 RPRWSPTPQQLMILQDLYRKgLRNPNSCQVQKITAHLslygKIQCKNVFYWFQNHKARDRQ 63
                              89*****************99*************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.268164IPR001356Homeobox domain
SMARTSM003896.5E-6168IPR001356Homeobox domain
CDDcd000869.00E-5264No hitNo description
Gene3DG3DSA:1.10.10.603.6E-7363IPR009057Homeodomain-like
PfamPF000463.6E-16363IPR001356Homeobox domain
SuperFamilySSF466894.23E-11363IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MPRPRWSPTP QQLMILQDLY RKGLRNPNSC QVQKITAHLS LYGKIQCKNV FYWFQNHKAR  60
DRQKLRKELL HQMQKNPNDD NAHQISLLTN TTNSNVLQSV GNFPSFPPIV HTLYPQSPAI  120
FLRQAEGKDT SSAQMLNNMG KVDLQKQCMI ENGMISTNFQ GWVLMMADNG HNSIPCSSNR  180
PLETLELFPV KATGIKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755233e-73HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487673.11e-105PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLK4DAY45e-97K4DAY4_SOLLC; Uncharacterized protein
STRINGSolyc11g072770.1.11e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.18e-33WOX family protein